Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs57707706 | chr1:41742155 | G/A | 8.19E-5 | 490 | 14.97 | 17.75 | 17.7 | KM Plot |
| THCA | rs57729820 | chr17:16949170 | T/A | 0.00013 | 482 | 16.38 | 16.02 | 11.03 | KM Plot |
| THCA | rs57757260 | chr16:20835116 | A/G | 3.83E-10 | 489 | 15.97 | 15 | 14.3 | KM Plot |
| THCA | rs57777269 | chr3:53966664 | C/T | 0 | 484 | 15.87 | 17.6 | 6.03 | KM Plot |
| THCA | rs578076 | chr8:12880628 | C/T | 0 | 490 | 13.33 | 14.47 | 16.13 | KM Plot |
| THCA | rs5783230 | chr10:11817626 | TAA/T | 1.56E-6 | 469 | 16.02 | 15 | 17.37 | KM Plot |
| THCA | rs578348 | chr1:41571317 | A/T | 4.9E-7 | 488 | 17.93 | 17.77 | 14.92 | KM Plot |
| THCA | rs57835751 | chr14:36080985 | T/C | 5.57E-6 | 484 | 15.93 | 16.35 | 8.33 | KM Plot |
| THCA | rs57856352 | chr11:93647073 | T/G | 0.000224 | 489 | 15.15 | 18.05 | 16.63 | KM Plot |
| THCA | rs57865162 | chr10:11829279 | A/C | 4.09E-5 | 486 | 16.02 | 14.8 | 32.1 | KM Plot |
| THCA | rs579215 | chr1:74759600 | G/T | 6.88E-10 | 488 | 15.7 | 16.88 | 7.77 | KM Plot |
| THCA | rs57941736 | chr16:20783737 | TA/T | 4.8E-5 | 490 | 16.37 | 14.67 | 17.47 | KM Plot |
| THCA | rs57948672 | chr10:73784079 | C/CT | 2.57E-7 | 484 | 16.27 | 14.85 | 14 | KM Plot |
| THCA | rs579798 | chr8:95972011 | T/C | 8.65E-5 | 489 | 15.9 | 16.2 | 10.25 | KM Plot |
| THCA | rs5798087 | chr12:49291132 | A/AT | 0.000323 | 482 | 16.8 | 16.2 | 13.93 | KM Plot |